PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027985
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 288aa    MW: 31873.9 Da    PI: 5.2297
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027985genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.35e-3177135259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ +tY++eHnh+
  DCAR_027985  77 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTMLMVTYSSEHNHP 135
                  69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-3270137IPR003657WRKY domain
SuperFamilySSF1182903.27E-2772137IPR003657WRKY domain
SMARTSM007741.7E-3776136IPR003657WRKY domain
PROSITE profilePS5081132.37477137IPR003657WRKY domain
PfamPF031061.8E-2678135IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEGRINQLVS DQEDYENSPE NSGDLLPSGT LSDHSKMTST TSPRKSRRAM HKRVVSVPIR  60
EVDGSRLKGE ITSTPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRAD  120
PTMLMVTYSS EHNHPWPASK NNPNRTRNQN QNEENNPPPS TATTSPTAVT VSISSPNFTT  180
SNSDDDQIPT IFAIDEEFTN LDPSFSSEFS WFSNFETTSS NVLENPILTN NHGLGEADIA  240
TIFSTEDEDS LYADLEELPG CSLVFRRGVA EEGRRRSLTP LCRTTAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-19781371674WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1445366e-32BT144536.1 Medicago truncatula clone JCVI-FLMt-4P21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001274847.11e-96WRKY transcription factor 5
TrEMBLA0A103XTV25e-98A0A103XTV2_CYNCS; DNA-binding WRKY
STRINGPGSC0003DMT4000732672e-92(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64752333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.14e-62WRKY DNA-binding protein 65